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OK, I saw the scribbles/annotation in the converted PDF file, it's just in the different page and seems to have a different zoom factor. I don't know what caused this, since this is a "Letter" sized PDF, and I am using DR1000's uds on my DR800.
Anyway, I have attached the PDF with metadata.db, maybe you can have a look at it when you have time.
By the way, GodzillaNL, do you have any plan to open source your code?
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